Biomed | Genomcore

Genomcore Biomed

Collaborative, flexible & compliant bioinformatics hybrid infrastructure

We offer you an infrastructure to meet the bioinformatics needs of the healthcare, diagnosis and pharma sectors, with a strong focus in compliance and collaborative analysis by teams of experts from different backgrounds

Bioinformatics, without credits

At Genomcore we are bioinformaticians by training and we don’t like to change our reliable “shell & queues” environments for unintuitive cloud platforms greedy of credits. That’s why we developed the Biomed platform. We want to provide you an always available, compliant platform addressed to teams with different expertises and backgrounds working together to address clinicaly-relevant challenges

Metadata and clinical records, Big Data style

Nobody likes HL7 and pre-defined data structures but too often the healthcare sector requires them. Despite we cannot change that, we offer you a customizable metadata annotation system you will love. Our semi-structured JSON-based record system and our form builder will enable experts to map, convert or create metadata schemas and will allow non-experts fill and query them easily

The limit is on your data, not in our tools

Genome aligners, read’s filterings, variant callers, microbiome annotations, interactive instances of your preferred statistical analysis tool. Whatever tool or pipeline you need is already available and packed as a Docker container that can be lauched with a single click. Use your .bam, .fastq, .vcf files stored in the platform and cross it with the metadata in our record’s system. And don’t worry about credits, you will always have available resources for you

Centralized repository

Federated repository

Break the silo! (or create one)

We learnt that the clinical settings are complex regarding data sharing on the cloud. Is not easy at all for healthcare IT professionals to deal with collaborative, multicentric analysis in the new -omics era. We solved this problem by allowing the creation and optional federation of diferent instances of Genomcore Biomed, allowing a fully-compliant sharing of data and resources under your own rules

Break the silo! (or create one)

We learnt that the clinical settings are complex regarding data sharing on the cloud. Is not easy at all for healthcare IT professionals to deal with collaborative, multicentric analysis in the new -omics era. We solved this problem by allowing the creation and optional federation of diferent instances of Genomcore Biomed, allowing a fully-compliant sharing of data and resources under your own rules.

Centralized repository

Federated repository

Your data, your rules

We are not (only) a cloud provider. We set-up bioinformatics infrastructures for the healthcare sector. Use our own managed datacenter in Barcelona or choose among >100 different datacenters from AWS, Azure or IBM clouds. Our hybrid-cloud abstraction layer allows a seamless deployment of Genomcore Biomed to most popular cloud providers or even to use your own on-premises cluster to store and analize clinical data with the most stringent compliance criteria

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Cloud

Use our secure cloud to store and analyze your data, with unlimited scalability, no maintenance and low prices

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On-premises

Use your organization’s datacenter or existing private cloud for the storing and processing of your data

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Hybrid

Worried about compliance but scared by limited scalability and maintenance costs? Go hybrid and relax!

ISO 27001 certified, HIPAA compliant

Because we know that security and privacy matters you the most, we are a ISO 27001 certified company and we only work with certified providers to ensure your data is safe night and day

ISO 27001 certified, HIPAA compliant

Because we know that security and privacy matters you the most, we are a ISO 27001 certified company and we only work with certified providers to ensure your data is safe night and day

Integrated with Genomcore Healthcare

A powerful infrastructure for personalized medicine and knowledge generation

Genomcore Healthcare is built on top of Genomcore Biomed, combining a powerful and flexible bioinformatics framework used by scientists with the specific use cases of the healthcare sector

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Anonymize and aggregate clinical datasets to share it with researchers out of your organization

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Convert the clinical records from your HIS to semi-structured metadata suitable for research

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Request a legal binding, on-line informed consent to your patients to join biomedical studies

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Use cases

Genomcore Biomed is used by diagnosis laboratories, research organizations and personalized medicine companies of all sizes, from small start-ups to multinational companies

Give a look to our selected use cases to see how Genomcore can help you in storing, processing and collaboratibely analyzing genetic and biomedical data

Use Case: Multicentric clinical trial for advanced breast cancer treatments

SOLTI chose Genomcore Biomed to store and collaboratively analyze molecular data in a clinical trial involving 12 reference hospitals in Spain.