Osagen, personalized medicine for Basque Country

Genomcore developed the project for the Basque Country, a pioneer region in healthcare in Spain

Challenge

To unify clinical genomics within Osakidetza, the Basque Public Healthcare Service.

Solution

Genomcore BIMS won the bidding to develop a platform to unify all clinical genomics.

Results

The project enabled centralized, secure, and scalable management of genomic data across Osakidetza. It improved traceability, reduced fragmentation of genomic services, and allowed integration with clinical workflows and research use cases.

Website

Location

Basque Country, Spain

Size

2.2 M people coverage

About

Osakidetza is the Public Healthcare Service of the Basque Country, recognized for its innovation in digital health. With a strong commitment to precision medicine, it pioneers genomic integration into routine care for equitable, efficient, and advanced diagnostics.

Project

Personalized medicine for a Spanish region

The project involved the deployment of Genomcore BIMS, a modular platform supporting the entire clinical genomics lifecycle—from raw data processing to clinical reporting. The system supports primary, secondary, and tertiary NGS analysis, integrates seamlessly with healthcare systems, and enables role-based data access. The infrastructure was scaled to all genomic units in Osakidetza, facilitating both clinical and research use. Training and custom use-case modules ensured adoption and optimal deployment across departments.

Osagen used features such as: Unified Multimodal Datastore (UMD), full NGS pipelines, visual and customizable interface, ACMG and AMP variant classification (manual and automated), interoperability via APIs and standard ontologies (HPO, HGNC, OMIM...), role-based access and pseudonaymization tools and integration with external platforms.

features used in this project

Unified Multimodal Datastore